DigiSal

Towards the Digital Salmon: From a reactive to a pre-emptive research strategy in aquaculture 

Summary

Salmon farming in the future must navigate conflicting and shifting demands of sustainability, shifting feed prices, disease, and product quality. The industry needs to develop a flexible, integrated basis of knowledge for rapid response to new challenges. Project DigiSal will lay the foundations for a Digital Salmon: an ensemble of mathematical descriptions of salmon physiology, combining mathematics, high-dimensional data analysis, computer science and measurement technology with genomics and experimental biology into a concerted whole.

DigiSal is about systems biology for salmon farming. The project will focus on challenges of novel feedstuffs. Salmon are carnivores but today aquaculture provides more than half their fat and protein from plants, challenging the metabolic system and affecting fish health and nutritional value of salmon meat. The newly sequenced salmon genome and related resources will enable a tightly integrated theoretical-experimental study of mechanistic interactions among genetic and feed factors.

Systems-oriented mathematical and statistical modelling will be central, using existing and novel knowledge e.g. on metabolic reaction networks to guide design of experiments through multiple iterations. Metabolic function of fish will be characterized via multiple omics technologies in feeding trials and in vitro tissue-slice culture. Gut microbiota will receive particular attention. The resulting massive data will be summarized via multivariate models to deliver a predictive understanding of a whole range of possible diets, much more efficiently than by traditional feeding trials alone. Data and models will be annotated using bio-relevant ontologies, so that new knowledge automatically connects to that which already exists. Future challenges will be met by quickly reanalysing existing information and understanding of salmon biology, identifying knowledge gaps, acquiring new data and incorporating it into a unified whole. Thus, we begin a shift from a reactive to a pre-emptive R&D strategy in aquaculture.

DigiSal is part of Digital Life, the RCN’s first call dedicated to systems biology.

Project home page: Towards the Digital Salmon: From a reactive to a pre-emptive research strategy in aquaculture (DigiSal)

CIGENE researchers involved: Jon Olav Vik, Fabian Grammes, Maksim Zakhartsev, Jin Yang,  Sigbjørn Lien, Matthew Peter Kent, Torfinn Nome, Simen Rød Sandve, Dag Inge Våge, Sahar Hassani.